BALL::TriangulatedSAS Class Reference

#include <BALL/STRUCTURE/triangulatedSAS.h>

Inheritance diagram for BALL::TriangulatedSAS:

Public Member Functions
Constructors and Destructors
	TriangulatedSAS ()
	TriangulatedSAS (const TriangulatedSAS &surface, bool=true)
	TriangulatedSAS (SolventAccessibleSurface *sas, const double &density)
virtual	~TriangulatedSAS ()
Assignment
void	set (const TriangulatedSAS &surface, bool=true)
TriangulatedSAS &	operator= (const TriangulatedSAS &surface)
Public Member Functions inherited from BALL::TriangulatedSurface
	TriangulatedSurface ()
	TriangulatedSurface (const TriangulatedSurface &surface, bool=true)
virtual	~TriangulatedSurface ()
void	clear ()
void	set (const TriangulatedSurface &surface, bool=true)
TriangulatedSurface &	operator= (const TriangulatedSurface &surface)
void	insert (TrianglePoint *point)
void	insert (TriangleEdge *edge)
void	insert (Triangle *triangle)
Size	getNumberOfPoints () const
Size	getNumberOfEdges () const
Size	getNumberOfTriangles () const
void	remove (TrianglePoint *point, bool deep=true)
void	remove (PointIterator p, bool deep=true)
void	remove (TriangleEdge *edge, bool deep=true)
void	remove (EdgeIterator e, bool deep=true)
void	remove (Triangle *triangle, bool deep=true)
void	remove (TriangleIterator t, bool deep=true)
void	exportSurface (Surface &surface)
TriangulatedSurface &	operator+= (const TriangulatedSurface &surface)
void	join (TriangulatedSurface &source)
void	shift (const TVector3< double > &c)
void	blowUp (const double &r)
void	setIndices ()
void	setDensity (const double &density)
double	getDensity () const
void	cut (const TPlane3< double > &plane, const double &fuzzy=0)
void	shrink ()
void	deleteIsolatedEdges ()
void	deleteIsolatedPoints ()
void	getBorder (std::list< TriangleEdge * > &border)
PointIterator	beginPoint ()
ConstPointIterator	beginPoint () const
PointIterator	endPoint ()
ConstPointIterator	endPoint () const
EdgeIterator	beginEdge ()
ConstEdgeIterator	beginEdge () const
EdgeIterator	endEdge ()
ConstEdgeIterator	endEdge () const
TriangleIterator	beginTriangle ()
ConstTriangleIterator	beginTriangle () const
TriangleIterator	endTriangle ()
ConstTriangleIterator	endTriangle () const

Friends
Class friends
class SASTriangulator
class	SASTriangulator

Accessors
SolventAccessibleSurface *	sas_
double	density_
void	setDensity (const double &density)
double	getDensity () const
void	compute ()

Additional Inherited Members
Public Types inherited from BALL::TriangulatedSurface
typedef std::list< TrianglePoint * >::iterator	PointIterator
typedef std::list< TrianglePoint * >::const_iterator	ConstPointIterator
typedef std::list< TriangleEdge * >::iterator	EdgeIterator
typedef std::list< TriangleEdge * >::const_iterator	ConstEdgeIterator
typedef std::list< Triangle * >::iterator	TriangleIterator
typedef std::list< Triangle * >::const_iterator	ConstTriangleIterator
Static Public Member Functions inherited from BALL::TriangulatedSurface
static TriangulatedSurface *	createTube (unsigned int num_vertices, unsigned int subdiv=0, bool closed=false, bool out=true)
static TriangulatedSurface *	createDisk (unsigned int num_vertices, bool out=true)
Protected Member Functions inherited from BALL::TriangulatedSurface
bool	canBeCopied () const
void	copy (const TriangulatedSurface &surface)
Protected Attributes inherited from BALL::TriangulatedSurface
Size	number_of_points_
std::list< TrianglePoint * >	points_
Size	number_of_edges_
std::list< TriangleEdge * >	edges_
Size	number_of_triangles_
std::list< Triangle * >	triangles_
double	density_

Detailed Description

Generic TriangulatedSAS Class. <>

Definition at line 62 of file triangulatedSAS.h.

Constructor & Destructor Documentation

TriangulatedSAS() [1/3]

BALL::TriangulatedSAS::TriangulatedSAS

(

)

Default constructor. This method creates a new TriangulatedSAS object.

TriangulatedSAS() [2/3]

BALL::TriangulatedSAS::TriangulatedSAS	(	const TriangulatedSAS &	surface,
		bool	= true
	)

Copy constructor. Create a new TriangulatedSAS object from another.

Parameters

surface	the TriangulatedSAS object to be copied
bool	ignored - just for interface consistency

TriangulatedSAS() [3/3]

BALL::TriangulatedSAS::TriangulatedSAS	(	SolventAccessibleSurface *	sas,
		const double &	density
	)

Detailed constructor. Create a new empty TriangulatedSAS object and set its SAS.

Parameters

sas	a pointer to the corresponding SAS
density	the density to use by triangulation

~TriangulatedSAS()

virtual BALL::TriangulatedSAS::~TriangulatedSAS ( )

virtual

Destructor. Destructs the TriangulatedSAS object.

Member Function Documentation

compute()

void BALL::TriangulatedSAS::compute

(

)

Compute the solvent-accessible surface

getDensity()

double BALL::TriangulatedSAS::getDensity

(

)

const

Get the density used by triangulation.

operator=()

TriangulatedSAS& BALL::TriangulatedSAS::operator=

(

const TriangulatedSAS &

surface

)

Assign from another TriangulatedSAS.

Parameters

surface

the TriangulatedSAS object to assign from

set()

void BALL::TriangulatedSAS::set	(	const TriangulatedSAS &	surface,
		bool	= true
	)

Assign from another TriangulatedSAS.

Parameters

surface	the TriangulatedSAS object to assign from
bool	ignored - just for interface consistency

setDensity()

void BALL::TriangulatedSAS::setDensity

(

const double &

density

)

Set the density used by triangulation.

Friends And Related Function Documentation

SASTriangulator

friend class SASTriangulator

friend

Definition at line 72 of file triangulatedSAS.h.

Member Data Documentation

density_

double BALL::TriangulatedSAS::density_

protected

Definition at line 148 of file triangulatedSAS.h.

sas_

SolventAccessibleSurface* BALL::TriangulatedSAS::sas_

protected

Definition at line 146 of file triangulatedSAS.h.