SBMLConvert.cpp File Reference

Performs conversion between SBML levels. More...

Include dependency graph for SBMLConvert.cpp:

Macros
#define	SET_ID(id, prefix, count)
	@_tcond_t _tdoxygenLibsbmlInternal_t

Functions
void	addMissingTrigger (Model &m)
void	addTrigger (Event *e)
void	adjustListOf (ListOf *listOf)
void	createNoValueStoichMath (Model &m, SpeciesReference &sr, unsigned int idCount)
void	createParameterAsRateRule (Model &m, SpeciesReference &sr, Rule &rr, unsigned int idCount)
void	dealWithAssigningL1Stoichiometry (Model &m, bool l2=true)
void	dealWithL1Stoichiometry (Model &m, bool l2=true)
void	dealWithSpeciesReference (Model &m, SpeciesReference *sr, unsigned int &idCount)
bool	isValidUnit (const Model *model, const std::string &unitId)
void	removeElementsMissingMath (Model &m)
void	removeListOfMissingElements (Model &m)
void	useStoichMath (Model &m, SpeciesReference &sr, bool isRule)

Variables
static const char *	ASSIGNED_COMPARTMENT = "AssignedName"

Detailed Description

Performs conversion between SBML levels.

Author

Ben Bornstein and Sarah Keating

Macro Definition Documentation

SET_ID

#define SET_ID	(		id,
			prefix,
			count
	)

Value:

{\
  std::stringstream str; str << prefix << count;\
  id = str.str();\
}

@_tcond_t _tdoxygenLibsbmlInternal_t

Function Documentation

addMissingTrigger()

void addMissingTrigger

(

Model &

m

)

addTrigger()

void addTrigger

(

Event *

e

)

adjustListOf()

void adjustListOf

(

ListOf *

listOf

)

createNoValueStoichMath()

void createNoValueStoichMath	(	Model &	m,
		SpeciesReference &	sr,
		unsigned int	idCount
	)

createParameterAsRateRule()

void createParameterAsRateRule	(	Model &	m,
		SpeciesReference &	sr,
		Rule &	rr,
		unsigned int	idCount
	)

dealWithAssigningL1Stoichiometry()

void dealWithAssigningL1Stoichiometry	(	Model &	m,
		bool	l2 = true
	)

dealWithL1Stoichiometry()

void dealWithL1Stoichiometry	(	Model &	m,
		bool	l2 = true
	)

dealWithSpeciesReference()

void dealWithSpeciesReference	(	Model &	m,
		SpeciesReference *	sr,
		unsigned int &	idCount
	)

isValidUnit()

bool isValidUnit	(	const Model *	model,
		const std::string &	unitId
	)

removeElementsMissingMath()

void removeElementsMissingMath

(

Model &

m

)

removeListOfMissingElements()

void removeListOfMissingElements

(

Model &

m

)

useStoichMath()

void useStoichMath	(	Model &	m,
		SpeciesReference &	sr,
		bool	isRule
	)

Variable Documentation

ASSIGNED_COMPARTMENT

const char* ASSIGNED_COMPARTMENT = "AssignedName"

static