Here are the data structures with brief descriptions:
[detail level 12]
  xmlpp | |
 __distance_transform_prepare | |
| __distance_transform_prepare< InputIterator, OutputIterator, bool > | |
| C1DFilterKernel | Base class for 1D filter kernels |
| C1DFoldingKernel | Base class for folding kernal types |
| C1DInterpolator | Basic Interpolator type for 1D Data |
| C1DInterpolatorFactory | Factory class for 1D interpolators |
| C1DScalar | A class for general scaling of one-dimensional arrays |
| C2DBoundingBox | 2D axis orthothogonal bounding box |
| C2DFifoFilterPlugin | The plug-in base class for the FIFO filters |
| C2DFilterChain | Convenience class to create a chain of 2D image filters |
| C2DFuzzyClusterSolver | A solver for the fuzzy segmentation smoothness constraint |
| C2DGroundTruthEvaluator | Main class for peudo ground truth estimation for perfusion series |
| C2DImage | This is the base class for 2D images that can hold generic pixel data |
| C2DImageCombiner | 2D Image combiner |
| C2DImageFifoFilter | The class to provide filtering of series of 2D images as if they where 3D images |
| C2DImageVector | Vector of 2D images to load and store series of images to one file |
| C2DInterpolatorFactory | The factory to create an interpolator from some input data |
| C2DIOVectorfield | Class for the IO of 2D vector fields |
| C2DMorphShape | Class for advanced morphological filter masks |
| C2DMultiImageNonrigidRegister | A 2D non-rigid registration class for time-marching PDE based registration |
| C2DPerfusionAnalysis | A class to run an ICA on a heart perfusion series |
| C2DPolygon | A simple 2D polygon class |
| C2DPPDivcurlMatrix | Precomputed matrix for the DivCurl regularization |
| C2DRegTimeStep | The time step class for time-marching registration algorithms |
| C2DRegTimeStepPlugin | Plug-in to create the time step evaluation |
| C2DRigidRegister | Linear Registration of 2D images |
| C2DSolveCG | Solve_sCG – a class providing a CG solver |
| C2DSplineTransformPenalty | Base class for transformation penalties in spline based deformations |
| C2DSplineTransformPenaltyPlugin | |
| C2DSplineTransformPenaltyPluginHandlerTest | |
 C2DStackDistanceTransform | A distance transform that stores distances to a 3D binary mask given as slices |
| C2DTransformation | This is the generic base class for 2D transformations |
| C2DTransformMock | This class mocks a transformation by implementing all the pure virtual methods of the C2DTransformation interface |
| C2DVFIOPluginHandlerTestPath | |
| C3DCamera | This class defines the view point for 3D visualization |
| C3DCriticalPoint | A class to hold a critical point. This class holds a critical point in a 3D vector field It consists of a localtion  , Matrix  , and a magnitude  . It is used only as an intermidiate storage |
| C3DCriticalPointEigen | A class to hold a criticalpoint with eigenvalues and eigenvectors |
| C3DDistance | 3D distance transform for high resolution data |
| C3DImage | The generic base type of a 3D image |
| C3DImageCollector | |
| C3DImageCombiner | Base class for plug-ins that combine two 3D images in certain ways |
| C3DImageRegister | |
| C3DImageVector | A class to interface images with image IO plugins |
| C3DInterpolatorFactory | A factory to create interpolators of a given type by providing input data |
| C3DIOVectorfield | An interface class to wrap a vector field into something, IO plugins can understand |
| C3DLandmark | Named 3D landmark |
| C3DLandmarklist | A list of named landmarks |
| C3DLandmarklistIOTestPath | |
| C3DLinearTransform | |
| C3DMultiImageRegister | A 3D non-rigid image registration class |
| C3DPPDivcurlMatrix | Precomputed Matrix for the DivCurl regularization |
| C3DRegTimeStep | The time-step part of time-marching registration algorithms |
| C3DRegTimeStepPlugin | The plug-in class for the time-step class of time-marching registration algorithms |
| C3DRigidRegister | 3D linear registration class |
| C3DSplineTransformPenalty | Base class for transformation penalties in spline based deformations |
| C3DSplineTransformPenaltyPlugin | |
| C3DSplineTransformPenaltyPluginHandlerTest | |
| C3DTransformation | This is the generic base class for 3D transformations |
| C3DTransformMock | A test class to enable running code that needs a transformation |
| C3DValueAttribute | 3D vector value used in attributes |
| C3DValueAttributeTranslator | Translater for 3D vectors to and from a std::string |
| CAttribute | The class of all attributes of data that is considered to ve meta-data |
| CAttributedData | A collection of attributes |
| CAttrTranslator | A class to translate an attribute from a string |
| CCircularIndex | A class to adress a circulat bufer of a fixed size |
| CCmdBoolOption | The command line option that sets a flag to true when given |
| CCmdFlagOption | Command line option that translates a string to a set of flags |
| CCmdOption | The base class for all command line options |
| CCmdOptionList | The class to hold the list of options |
| CCmdStringOption | The command line option that expects a string |
| CCombinerResult | |
| CComplexOptionParser | Parser for complex command line options |
| CCorrelationEvaluator | Evaluate the correlation between neighboring pixels in an image series |
| CCWDSaver | A Scope based helper class to save and restore the current working directory |
| CDatapool | Temporary data storage to avoid storing on disk |
| CDictParameter | Dictionary paramater |
| CDLLoader | Portabe Dynamic Link Library Loader |
| CDummyType | |
| CFFT1D_R2C | Class to real-to-complex 1D FFTs |
| CFFTSlopeClassifier | Curve classifier for heart perfusion data |
| CFile | A wrapper for the cstdio file type that closes the file automatically when the scope is left |
| CFixedWidthOutput | This class provides formatted writing to a text console |
| CFlagString | |
| CFullStats | This class is used to evaluate the statistics of a series of input data |
| CHelpOption | A command line option that will appear in the help group and exits the program after printing the help |
| CHistory | This class holds the complete history list of a data set |
| CICAAnalysis | Class for ICA analysis and use of such data. This class implements basic operations for of ICA. It makes use of the ITPP implementation of FastICA |
| CImageComparePrinter | Class to print out the intensity values of two images to compare them |
| CInputFile | A stdio FILE for opening a file for reading |
| CIOData | Helper class to derive from for data that can be loaded and stored to a disk |
| CLabelMap | A simple class to add loadind and storeing to a map of labels |
| clist | |
| CMinimizer | A class for generalized minimization problems |
| CMsgStreamPrintCallback | Class to provide a feedback mechanism to show progress based on textual output |
| CNoiseGenerator | Base class for the noise generators |
| CopyC2DImageToP2DImage | Functor to copy an image into paointer representation |
| cost_type | Plugin helper type |
| COutputFile | A stdio FILE for opening a file for writing |
| CParameter | The base class for parameters used in complex options |
| CParamList | A class to hold a list of named parameters |
| CParamOption | Command line option that handles a parameter |
| CPluginBase | The base class for all plug-ins |
| CPluginHandlerBase | The base class for all plugin handlers |
| CPluginModule | The plugin module loading class |
| CProbabilityVector | A vector of probablility values |
| CProductBase | The base class for all plug-in created object |
| CProductCache | Base class for the product cache |
| CProductCacheHandler | The singleton that handles all product caches |
| CProgressCallback | Class to provide a feedback mechanism to show progress |
| CPropertyFlagHolder | This class holds a set of properties |
| creator_type | |
| CRGB2DImage | |
| cross_product | |
| CSegFrame | A class to represent one segmented frame in a heart perfusion series |
| CSegPoint2D | Point in a 2D segmentation shape |
| CSegSection | Segmentation class to represent a section of the LV myocardium |
| CSegSet | A set of segmentation of a 2D series of perfusion images |
| CSegSetWithImages | A set of images and its segmentations, related to heart perfusion analysis |
| CSegStar | Helper class for the segmentation of the left heart ventricle myocardium |
| CSetParameter | A parameter that can only assume values out of a limited set |
| CSlopeClassifier | Curve classifier for heart perfusion data |
| CSlopeStatistics | Runs some statistics over a one-dimensional curve |
| CSplineBoundaryCondition | Abstract base class for B-spline interpolation boundary conditions |
| CSplineBoundaryConditionPlugin | Base plugin for spline boundary conditions |
| CSplineBoundaryConditionTestPath | |
| CSplineKernel | Base class for all spline based interpolation kernels |
| CSplineKernelTestPath | |
| CSplineParzenMI | Implementation of mutual information based on B-splines |
| cst2d_kernel | Plugin-helper structure |
| CStringAttrTranslatorMap | A singelton class to translate strings to attributes based on keys |
| CStringParameter | String parameter |
| CTestIOPlugin | |
| CTestPlugin | Class to test plugin handling |
| CTestPluginHandlerImpl | Class to test plugin handling |
| CThreadMsgStream | This class is used to handle syncronizized output of logging output in a multi-threaded environment |
| CTParameter | Generic type of a complex paramter |
| CTrace | |
| CTriangleMesh | A class to deine a triangle mesh with some attributes |
| CWatch | A class for measuring time |
| CWaveletSlopeClassifier | Curve classifier for heart perfusion data |
| dim_traits | A trait to obtaine information about of dimensions of a class |
| FactoryTrait | Type trait to enable the use of a factory product as command line option |
| FactoryTrait< std::shared_ptr< T > > | Type trait to enable the use of a factory product as command line option |
| FConvert2DImageToPixeltypeO | Functor to convert an image with an abitrary pixel type to single floating point pixels |
| FConvert3DImageToPixeltypeO | Functor to convert an image with an abitrary pixel type to single floating point pixels |
| FDeformer2D | |
| FDeformer3D | A filter to transform an image |
| fft2d_kernel_data | |
| fifof_Fixture | Fixture to test FIFO filtering |
| FIntensityStatsAccumulator | Functor to accumulate statistics of data |
| FMeanVariance | Functor to be called by mia::filter to evaluate mean and variance of a series of data |
| FMedianMAD | Functor to be called by mia::filter to evaluate median and median average distance (MAD) of a series of data |
| FWrapStaticDataInSharedPointer | Functor to wrap statically allocated data a shared pointer representation |
| generator_type | |
| grayscale_noise_data | |
| GroundTruthProblem | Class for the evaluation of a pseudo ground truth of a perfusion series |
| io_2dvf_type | |
| io_3dimage_data | |
| kernel_plugin_type | |
| less_then< T2DVector< T > > | |
| less_then< T3DVector< T > > | |
| multiply | Class template to implement a matrix - field multiplication |
| multiply< T2DImage< T > > | |
| NDVectorIOcvd | Structure to read and write ND vectors to and from cvd files |
| pattr_less | |
| PrepareTestPluginPath | |
| Quaternion | Class to implement a quaternion |
| range2d_iterator | 2D iterator that knows its position in the 2D grid ans supports iterating over sub-ranges |
| range3d_iterator | 3D iterator that knows its position in the 3D grid ans supports iterating over sub-ranges |
| regmodel_type | |
| SFuzzySegParams | |
| shape_type | |
| SImageSize | |
| SIntensityStats | Data structure to store te results of a statistical analyis of images |
| solve_lines_t | |
| solve_sCG | Class providing a CG solver |
| spacial_kernel_data | |
| streamredir | Base class to redirect output streams |
| T1DConvoluteInterpolator | Interpolator that uses some kind of spaciel kernel |
| T1DInterpolator | Interpolator base class providing the full interface |
| T2DConvoluteInterpolator | The base class for 2D interpolators that use some kind of spacial convolution |
| T2DDatafield | A class to hold data on a regular 2D grid |
| T2DImage | This is the template version of a 2D image that is used for holding real data |
| T2DInterpolator | The base class template for all kinds of interpolators |
| T2DMatrix | A simple 2x2 matrix |
| T2DVector | 2D vector |
| T2DVectorfield | 2D Vector field |
| T3DConvoluteInterpolator | Interpolator that is based on convolution,like b-splines an o-moms |
| T3DDatafield | A templated class of a 3D data field |
| T3DImage | Specific type of the 3D images that hold real pixel data |
| T3DInterpolator | Basic Interpolator type for 3D Data |
| T3DMatrix | Simple 3x3 matrix |
| T3DVector | A simple 3D vector type |
| T3DVectorfield | 3D vector field |
| TAttribute | Class of an attribute that holds data of type T |
| TCmdOption | Templated version based on CCmdOptionValue for values that can be converted to and from strings by stream operators |
| TCost | The generic cost function interface |
| TCST2DKernel | Base class for cos/sin transformation filters |
| TCSTPlan | |
| TDataFilter | Generic interface class to data filters |
| TDataFilterPlugin | Generic image filter plugin base |
| TDataSeriesICA | Templated representation of a ICA series analyis |
| TDelayedParameter | A parameter proxy object with a key to identify it |
| TDictMap | A mapper from emums to string values. - usefull for names flags |
| test_io_data | |
| TFactory | This is tha base of all plugins that create "things", like filters, cost functions time step operatores and the like |
| TFactoryParameter | A parameter that get's initialized by a factory to a shared or unique pointer |
| TFactoryPluginHandler | Base class for all plugn handlers that deal with factory plugins |
| TFifoFilter | Generic base class for out-of-core FIFO filters |
| TFifoFilterSink | Helper class for testing FIFO filter chains |
| TFilter | Base class for all filer type functors |
| TFilterChain | Create and use a chain of filters |
| TFiltertestFixture | Fixture to do general plug.in testing |
| TFullCost | Base class for a general cost function |
| TFullCostList | A accumulation of cost functions that are weigted against each other |
| TFullCostPlugin | Base class for the TFullCost cost function plug-ins |
| THandlerSingleton | Singleton that a plug-in handler really is |
| THistogram | Simple histogram that uses an instance of THistogramFeeder as input converter |
| THistogramFeeder | A class to normalize and quantizize input data to a given histogram range with its given number of bins |
| THistogramFeeder< unsigned char > | Specialization of the THistogramFeeder for unsigned byte input data |
| TImageCreator | The base class for generic image creation |
| TIOPlugin | The templatex basis class of all IO plug-ins |
| TIOPluginHandler | Template for all plug-in handlers that are responsible for data IO |
| TNonrigidRegister | Class for image registration |
| TNonrigidRegisterImpl | |
| TParameter | A parameter that can assume any value of the given value type |
| TPlugin | The generic base for all plug-ins |
| TPluginHandler | The basic template of all plugin handlers |
| TPluginHandlerHelpCallback | Help callback to print the help for the given plug-in |
| TPolyTriangulator | Class to make a triangle mesh from a closed polygon |
| TProductCache | The type specific product cache |
| TRangeParameter | Scalar parameter with an expected value range |
| Transformation | Generic base class for transformations |
| TRefHolder | A class to make a const reference not so const |
| TRegModel | Base class for PDE model based registrations |
| TShape | Generic class for morphological shapes |
| TSimilarityProfile | A class to evaluate image similarity profiles of image series |
| TSparseSolver | Solver for sparse systems of equations |
| TTrackPoint | Class to track pixel movement based on a transformation |
| TTransformCreator | |
| TTransformCreatorPlugin | Factory class that is used to create the transformation creator |
| TTranslator | Generic string vs. attribute translator singleton |
| TWatershed | Templated version of the standard watershed algorithm |
| TWatershedFilterPlugin | Plugin for the templated version of the standard watershed algorithm |
| Vector | A wrapper around the c-array to provide an STL like interface for iterators |
| vector_dimsize | Structure to enable the use of the dim_traits class for std::vector |
| void_destructor | A helper class to make it possible to store a non-pointer object or a pointer that must not be freed in a shared pointer |
 vstream | A output stream to enable certain levels of verbosity |
