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RDKit
Open-source cheminformatics and machine learning.
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The inversion term for the Universal Force Field. More...
#include <Inversion.h>
Public Member Functions | |
| InversionContrib () | |
| InversionContrib (ForceField *owner, unsigned int idx1, unsigned int idx2, unsigned int idx3, unsigned int idx4, int at2AtomicNum, bool isCBoundToO) | |
| Constructor. More... | |
| double | getEnergy (double *pos) const |
| returns our contribution to the energy of a position More... | |
| void | getGrad (double *pos, double *grad) const |
| calculates our contribution to the gradients of a position More... | |
| virtual InversionContrib * | copy () const |
| return a copy More... | |
Public Member Functions inherited from ForceFields::ForceFieldContrib | |
| ForceFieldContrib () | |
| ForceFieldContrib (ForceFields::ForceField *owner) | |
| virtual | ~ForceFieldContrib () |
Additional Inherited Members | |
Protected Attributes inherited from ForceFields::ForceFieldContrib | |
| ForceField * | dp_forceField |
| our owning ForceField More... | |
The inversion term for the Universal Force Field.
Definition at line 23 of file Inversion.h.
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inline |
Definition at line 25 of file Inversion.h.
References getEnergy(), and getGrad().
Referenced by copy().
| ForceFields::UFF::InversionContrib::InversionContrib | ( | ForceField * | owner, |
| unsigned int | idx1, | ||
| unsigned int | idx2, | ||
| unsigned int | idx3, | ||
| unsigned int | idx4, | ||
| int | at2AtomicNum, | ||
| bool | isCBoundToO | ||
| ) |
Constructor.
| owner | pointer to the owning ForceField |
| idx1 | index of atom1 in the ForceField's positions |
| idx2 | index of atom2 in the ForceField's positions |
| idx3 | index of atom3 in the ForceField's positions |
| idx4 | index of atom4 in the ForceField's positions |
| at2AtomicNum | atomic number for atom 2 |
| isCBoundToO | boolean flag; true if atom 2 is sp2 carbon bound to sp2 oxygen |
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inlinevirtual |
return a copy
Implements ForceFields::ForceFieldContrib.
Definition at line 45 of file Inversion.h.
References ForceFields::UFF::Utils::calcInversionCoefficientsAndForceConstant(), ForceFields::UFF::Utils::calculateCosY(), and InversionContrib().
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virtual |
returns our contribution to the energy of a position
Implements ForceFields::ForceFieldContrib.
Referenced by InversionContrib().
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virtual |
calculates our contribution to the gradients of a position
Implements ForceFields::ForceFieldContrib.
Referenced by InversionContrib().