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RDKit
Open-source cheminformatics and machine learning.
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the van der Waals term for the Universal Force Field More...
#include <Nonbonded.h>
Public Member Functions | |
| vdWContrib () | |
| vdWContrib (ForceField *owner, unsigned int idx1, unsigned int idx2, const AtomicParams *at1Params, const AtomicParams *at2Params, double threshMultiplier=10.0) | |
| Constructor. More... | |
| double | getEnergy (double *pos) const |
| returns our contribution to the energy of a position More... | |
| void | getGrad (double *pos, double *grad) const |
| calculates our contribution to the gradients of a position More... | |
| virtual vdWContrib * | copy () const |
| return a copy More... | |
Public Member Functions inherited from ForceFields::ForceFieldContrib | |
| ForceFieldContrib () | |
| ForceFieldContrib (ForceFields::ForceField *owner) | |
| virtual | ~ForceFieldContrib () |
Additional Inherited Members | |
Protected Attributes inherited from ForceFields::ForceFieldContrib | |
| ForceField * | dp_forceField |
| our owning ForceField More... | |
the van der Waals term for the Universal Force Field
The Distance Threshold For the sake of efficiency, each vdwContrib maintains a threshold distance. When the distance between the two atoms exceeds this threshold, the vdwContrib makes no contribution to either the energy or the gradient.
The threshold is set to a multiple of the vdW distance's preferred length. This multiplier can be supplied to the constructor.
Definition at line 30 of file UFF/Nonbonded.h.
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inline |
Definition at line 32 of file UFF/Nonbonded.h.
References getEnergy(), and getGrad().
Referenced by copy().
| ForceFields::UFF::vdWContrib::vdWContrib | ( | ForceField * | owner, |
| unsigned int | idx1, | ||
| unsigned int | idx2, | ||
| const AtomicParams * | at1Params, | ||
| const AtomicParams * | at2Params, | ||
| double | threshMultiplier = 10.0 |
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| ) |
Constructor.
| owner | pointer to the owning ForceField |
| idx1 | index of end1 in the ForceField's positions |
| idx2 | index of end2 in the ForceField's positions |
| at1Params | pointer to the parameters for end1 |
| at2Params | pointer to the parameters for end2 |
| threshMultiplier | (optional) multiplier for the threshold calculation. See class documentation for details. |
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inlinevirtual |
return a copy
Implements ForceFields::ForceFieldContrib.
Definition at line 50 of file UFF/Nonbonded.h.
References ForceFields::UFF::Utils::calcNonbondedDepth(), ForceFields::UFF::Utils::calcNonbondedMinimum(), and vdWContrib().
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virtual |
returns our contribution to the energy of a position
Implements ForceFields::ForceFieldContrib.
Referenced by vdWContrib().
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virtual |
calculates our contribution to the gradients of a position
Implements ForceFields::ForceFieldContrib.
Referenced by vdWContrib().