| addConformer(Conformer *conf, bool assignId=false) | RDKit::ROMol | |
| beginAromaticAtoms() | RDKit::ROMol | |
| beginAromaticAtoms() const | RDKit::ROMol | |
| beginAtoms() | RDKit::ROMol | |
| beginAtoms() const | RDKit::ROMol | |
| beginBonds() | RDKit::ROMol | |
| beginBonds() const | RDKit::ROMol | |
| beginConformers() | RDKit::ROMol | inline |
| beginConformers() const | RDKit::ROMol | inline |
| beginHeteros() | RDKit::ROMol | |
| beginHeteros() const | RDKit::ROMol | |
| beginMatchingAtoms(bool(*query)(Atom *)) | RDKit::ROMol | |
| beginMatchingAtoms(bool(*query)(const Atom *)) const | RDKit::ROMol | |
| beginQueryAtoms(QueryAtom const *query) | RDKit::ROMol | |
| beginQueryAtoms(QueryAtom const *) const | RDKit::ROMol | |
| clearAllAtomBookmarks() | RDKit::ROMol | inline |
| clearAllBondBookmarks() | RDKit::ROMol | inline |
| clearAtomBookmark(const int mark) | RDKit::ROMol | |
| clearAtomBookmark(const int mark, const Atom *atom) | RDKit::ROMol | |
| clearAtomBookmark(const int mark, ATOM_SPTR atom) | RDKit::ROMol | inline |
| clearBondBookmark(int mark) | RDKit::ROMol | |
| clearBondBookmark(int mark, const Bond *bond) | RDKit::ROMol | |
| clearBondBookmark(int mark, BOND_SPTR bond) | RDKit::ROMol | inline |
| clearComputedProps(bool includeRings=true) const | RDKit::ROMol | |
| clearConformers() | RDKit::ROMol | inline |
| clearProp(const char *key) const | RDKit::ROMol | inline |
| clearProp(const std::string &key) const | RDKit::ROMol | inline |
| debugMol(std::ostream &str) const | RDKit::ROMol | |
| endAromaticAtoms() | RDKit::ROMol | |
| endAromaticAtoms() const | RDKit::ROMol | |
| endAtoms() | RDKit::ROMol | |
| endAtoms() const | RDKit::ROMol | |
| endBonds() | RDKit::ROMol | |
| endBonds() const | RDKit::ROMol | |
| endConformers() | RDKit::ROMol | inline |
| endConformers() const | RDKit::ROMol | inline |
| endHeteros() | RDKit::ROMol | |
| endHeteros() const | RDKit::ROMol | |
| endMatchingAtoms() | RDKit::ROMol | |
| endMatchingAtoms() const | RDKit::ROMol | |
| endQueryAtoms() | RDKit::ROMol | |
| endQueryAtoms() const | RDKit::ROMol | |
| getAllAtomsWithBookmark(int mark) | RDKit::ROMol | |
| getAllBondsWithBookmark(int mark) | RDKit::ROMol | |
| getAtomBonds(Atom const *at) const | RDKit::ROMol | |
| getAtomBookmarks() | RDKit::ROMol | inline |
| getAtomDegree(const Atom *at) const | RDKit::ROMol | |
| getAtomDegree(ATOM_SPTR at) const | RDKit::ROMol | |
| getAtomNeighbors(Atom const *at) const | RDKit::ROMol | |
| getAtomNeighbors(ATOM_SPTR at) const | RDKit::ROMol | |
| getAtomWithBookmark(int mark) | RDKit::ROMol | |
| getAtomWithIdx(unsigned int idx) | RDKit::ROMol | |
| getAtomWithIdx(unsigned int idx) const | RDKit::ROMol | |
| getAtomWithIdx(const U idx) | RDKit::ROMol | inline |
| getAtomWithIdx(const U idx) const | RDKit::ROMol | inline |
| getBondBetweenAtoms(unsigned int idx1, unsigned int idx2) | RDKit::ROMol | |
| getBondBetweenAtoms(unsigned int idx1, unsigned int idx2) const | RDKit::ROMol | |
| getBondBetweenAtoms(const U idx1, const V idx2) | RDKit::ROMol | inline |
| getBondBetweenAtoms(const U idx1, const V idx2) const | RDKit::ROMol | inline |
| getBondBookmarks() | RDKit::ROMol | inline |
| getBondWithBookmark(int mark) | RDKit::ROMol | |
| getBondWithIdx(unsigned int idx) | RDKit::ROMol | |
| getBondWithIdx(unsigned int idx) const | RDKit::ROMol | |
| getBondWithIdx(const U idx) | RDKit::ROMol | inline |
| getBondWithIdx(const U idx) const | RDKit::ROMol | inline |
| getConformer(int id=-1) const | RDKit::ROMol | |
| getConformer(int id=-1) | RDKit::ROMol | |
| getEdges() | RDKit::ROMol | |
| getEdges() const | RDKit::ROMol | |
| getNumAtoms(bool onlyExplicit=1) const | RDKit::ROMol | |
| getNumBonds(bool onlyHeavy=1) const | RDKit::ROMol | |
| getNumConformers() const | RDKit::ROMol | inline |
| getNumHeavyAtoms() const | RDKit::ROMol | |
| getProp(const char *key, T &res) const | RDKit::ROMol | inline |
| getProp(const std::string &key, T &res) const | RDKit::ROMol | inline |
| getProp(const char *key) const | RDKit::ROMol | inline |
| getProp(const std::string &key) const | RDKit::ROMol | inline |
| getPropIfPresent(const char *key, T &res) const | RDKit::ROMol | inline |
| getPropIfPresent(const std::string &key, T &res) const | RDKit::ROMol | inline |
| getPropList(bool includePrivate=true, bool includeComputed=true) const | RDKit::ROMol | inline |
| getRingInfo() const | RDKit::ROMol | inline |
| getTopology() const | RDKit::ROMol | inline |
| getVertices() | RDKit::ROMol | |
| getVertices() const | RDKit::ROMol | |
| hasAtomBookmark(int mark) const | RDKit::ROMol | inline |
| hasBondBookmark(int mark) const | RDKit::ROMol | inline |
| hasProp(const char *key) const | RDKit::ROMol | inline |
| hasProp(const std::string &key) const | RDKit::ROMol | inline |
| MolPickler class | RDKit::ROMol | friend |
| needsUpdatePropertyCache() const | RDKit::ROMol | |
| operator[](const vertex_descriptor &v) | RDKit::ROMol | inline |
| operator[](const vertex_descriptor &v) const | RDKit::ROMol | inline |
| operator[](const edge_descriptor &e) | RDKit::ROMol | inline |
| operator[](const edge_descriptor &e) const | RDKit::ROMol | inline |
| removeConformer(unsigned int id) | RDKit::ROMol | |
| replaceAtomBookmark(ATOM_SPTR at, int mark) | RDKit::ROMol | inline |
| replaceAtomBookmark(Atom *at, int mark) | RDKit::ROMol | inline |
| ROMol() | RDKit::ROMol | inline |
| ROMol(const ROMol &other, bool quickCopy=false, int confId=-1) | RDKit::ROMol | inline |
| ROMol(const std::string &binStr) | RDKit::ROMol | |
| RWMol class | RDKit::ROMol | friend |
| setAtomBookmark(ATOM_SPTR at, int mark) | RDKit::ROMol | inline |
| setAtomBookmark(Atom *at, int mark) | RDKit::ROMol | inline |
| setBondBookmark(BOND_SPTR bond, int mark) | RDKit::ROMol | inline |
| setBondBookmark(Bond *bond, int mark) | RDKit::ROMol | inline |
| setProp(const char *key, T val, bool computed=false) const | RDKit::ROMol | inline |
| setProp(const std::string &key, T val, bool computed=false) const | RDKit::ROMol | inline |
| updatePropertyCache(bool strict=true) | RDKit::ROMol | |
| ~ROMol() | RDKit::ROMol | inlinevirtual |