Uses of Interface
htsjdk.samtools.SAMRecordComparator

Packages that use SAMRecordComparator

Package	Description
htsjdk.samtools

Uses of SAMRecordComparator in htsjdk.samtools

Classes in htsjdk.samtools that implement SAMRecordComparator

Modifier and Type	Class and Description
class	SAMRecordCoordinateComparator Comparator for sorting SAMRecords by coordinate.
class	SAMRecordDuplicateComparator Compares records based on if they should be considered PCR Duplicates (see MarkDuplicates).
class	SAMRecordQueryHashComparator SAMRecord comparator that provides an ordering based on a hash of the queryname.
class	SAMRecordQueryNameComparator Comparator for "queryname" ordering of SAMRecords.

Methods in htsjdk.samtools that return SAMRecordComparator

Modifier and Type	Method and Description
SAMRecordComparator	SAMFileHeader.SortOrder.getComparatorInstance()

Methods in htsjdk.samtools that return types with arguments of type SAMRecordComparator

Modifier and Type	Method and Description
java.lang.Class<? extends SAMRecordComparator>	SAMFileHeader.SortOrder.getComparator()