Uses of Interface
htsjdk.samtools.SAMRecordFactory

Packages that use SAMRecordFactory

Package	Description
htsjdk.samtools

Uses of SAMRecordFactory in htsjdk.samtools

Classes in htsjdk.samtools that implement SAMRecordFactory

Modifier and Type	Class and Description
class	DefaultSAMRecordFactory Default factory for creating SAM and BAM records used by the SAMFileReader classes.

Methods in htsjdk.samtools with parameters of type SAMRecordFactory

Modifier and Type	Method and Description
abstract SamReaderFactory	SamReaderFactory.samRecordFactory(SAMRecordFactory samRecordFactory) Set this factory's SAMRecordFactory to the provided one, then returns itself.
void	SAMFileReader.setSAMRecordFactory(SAMRecordFactory factory) Deprecated. Override the default SAMRecordFactory class used to instantiate instances of SAMRecord and BAMRecord.

Constructors in htsjdk.samtools with parameters of type SAMRecordFactory

Constructor and Description
BAMRecordCodec(SAMFileHeader header, SAMRecordFactory factory)
SAMLineParser(SAMRecordFactory samRecordFactory, ValidationStringency validationStringency, SAMFileHeader samFileHeader, SamReader samFileReader, java.io.File samFile) Public constructor.