| Package | Description |
|---|---|
| htsjdk.samtools |
| Modifier and Type | Method and Description |
|---|---|
static SQTagUtil.SQBase |
SQTagUtil.sqValueToBase(byte sqValue)
Retrieve the 2nd-best base call from SQ value.
|
static SQTagUtil.SQBase |
SQTagUtil.SQBase.valueOf(java.lang.String name)
Returns the enum constant of this type with the specified name.
|
static SQTagUtil.SQBase[] |
SQTagUtil.SQBase.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
static byte |
SQTagUtil.baseAndProbDiffToSqValue(SQTagUtil.SQBase base,
byte probRatio)
Compress a base and a log probabiliy difference (-10log10(p3/p2)) into
a single byte so that it can be output in a SAMRecord's SQ field.
|