Uses of Interface
htsjdk.samtools.SamReader.Indexing

Packages that use SamReader.Indexing

Package	Description
htsjdk.samtools

Uses of SamReader.Indexing in htsjdk.samtools

Classes in htsjdk.samtools that implement SamReader.Indexing

Modifier and Type	Class and Description
class	CRAMFileReader BAMFileReader analogue for CRAM files.
class	SAMFileReader Deprecated.
class	SAMFileTruncatedReader Deprecated.
static class	SamReader.PrimitiveSamReaderToSamReaderAdapter Decorator for a SamReader.PrimitiveSamReader that expands its functionality into a SamReader, given the backing SamInputResource.
class	SRAFileReader

Methods in htsjdk.samtools that return SamReader.Indexing

Modifier and Type	Method and Description
SamReader.Indexing	SamReader.indexing() Exposes the SamReader.Indexing facet of this SamReader.
SamReader.Indexing	SamReader.PrimitiveSamReaderToSamReaderAdapter.indexing()
SamReader.Indexing	SAMFileReader.indexing() Deprecated.