Uses of Class
htsjdk.samtools.cram.common.Version

Packages that use Version

Package	Description
htsjdk.samtools.cram.build
htsjdk.samtools.cram.common
htsjdk.samtools.cram.structure

Uses of Version in htsjdk.samtools.cram.build

Methods in htsjdk.samtools.cram.build with parameters of type Version

Modifier and Type	Method and Description
static long	CramIO.issueEOF(Version version, java.io.OutputStream outputStream) Write an end-of-file marker to the OutputStream.

Constructors in htsjdk.samtools.cram.build with parameters of type Version

Constructor and Description
Sam2CramRecordFactory(byte[] refBases, SAMFileHeader samFileHeader, Version version)

Uses of Version in htsjdk.samtools.cram.common

Fields in htsjdk.samtools.cram.common declared as Version

Modifier and Type	Field and Description
static Version	CramVersions.CRAM_v2_1
static Version	CramVersions.CRAM_v3

Methods in htsjdk.samtools.cram.common with parameters of type Version

Modifier and Type	Method and Description
int	Version.compareTo(Version o) Compare with another version.
boolean	Version.compatibleWith(Version version)
static void	CramVersionPolicies.eofNotFound(Version version) The method holds the behaviour for when the EOF marker is not found.

Uses of Version in htsjdk.samtools.cram.structure

Methods in htsjdk.samtools.cram.structure that return Version

Modifier and Type	Method and Description
Version	CramHeader.getVersion()

Methods in htsjdk.samtools.cram.structure with parameters of type Version

Modifier and Type	Method and Description
static long	ContainerIO.getByteSize(Version version, Container container) Calculates the byte size of a container based on the CRAM version.
static Container	ContainerIO.readContainer(Version version, java.io.InputStream inputStream) Reads a CRAM container from the input stream.
void	CramHeader.setVersion(Version version)
static int	ContainerIO.writeContainer(Version version, Container container, java.io.OutputStream outputStream) Writes a complete Container with it's header to a OutputStream.

Constructors in htsjdk.samtools.cram.structure with parameters of type Version

Constructor and Description
CramHeader(Version version, java.lang.String id, SAMFileHeader samFileHeader) Create a new CramHeader object with the specified version, id and SAM file header.