Uses of Interface
htsjdk.samtools.cram.encoding.Encoding

Packages that use Encoding

Package	Description
htsjdk.samtools.cram.build
htsjdk.samtools.cram.encoding
htsjdk.samtools.cram.encoding.huffman.codec

Uses of Encoding in htsjdk.samtools.cram.build

Methods in htsjdk.samtools.cram.build that return Encoding

Modifier and Type	Method and Description
Encoding<java.lang.Integer>	CompressionHeaderFactory.IntegerEncodingCalculator.getBestEncoding()

Constructors in htsjdk.samtools.cram.build with parameters of type Encoding

Constructor and Description
EncodingLengthCalculator(Encoding<java.lang.Integer> encoding)

Uses of Encoding in htsjdk.samtools.cram.encoding

Classes in htsjdk.samtools.cram.encoding that implement Encoding

Modifier and Type	Class and Description
class	BetaIntegerEncoding
class	ByteArrayLenEncoding
class	ByteArrayStopEncoding
class	ExternalByteArrayEncoding
class	ExternalByteEncoding
class	ExternalIntegerEncoding
class	ExternalLongEncoding
class	GammaIntegerEncoding
class	GolombIntegerEncoding
class	GolombLongEncoding
class	GolombRiceIntegerEncoding
class	NullEncoding<T>
class	SubexponentialIntegerEncoding

Methods in htsjdk.samtools.cram.encoding that return Encoding

Modifier and Type	Method and Description
<T> Encoding<T>	EncodingFactory.createEncoding(DataSeriesType valueType, EncodingID id) Create an encoding for the data series type and encoding id.

Uses of Encoding in htsjdk.samtools.cram.encoding.huffman.codec

Classes in htsjdk.samtools.cram.encoding.huffman.codec that implement Encoding

Modifier and Type	Class and Description
class	HuffmanByteEncoding
class	HuffmanIntegerEncoding