Uses of Class
htsjdk.samtools.cram.structure.CompressionHeader

Packages that use CompressionHeader

Package	Description
htsjdk.samtools.cram.build
htsjdk.samtools.cram.encoding.reader
htsjdk.samtools.cram.encoding.writer
htsjdk.samtools.cram.structure

Uses of CompressionHeader in htsjdk.samtools.cram.build

Methods in htsjdk.samtools.cram.build that return CompressionHeader

Modifier and Type	Method and Description
CompressionHeader	CompressionHeaderFactory.build(java.util.List<CramCompressionRecord> records, SubstitutionMatrix substitutionMatrix, boolean sorted)

Uses of CompressionHeader in htsjdk.samtools.cram.encoding.reader

Methods in htsjdk.samtools.cram.encoding.reader with parameters of type CompressionHeader

Modifier and Type	Method and Description
AbstractReader	DataReaderFactory.buildReader(AbstractReader reader, BitInputStream bitInputStream, java.util.Map<java.lang.Integer,java.io.InputStream> inputMap, CompressionHeader header, int refId)

Uses of CompressionHeader in htsjdk.samtools.cram.encoding.writer

Methods in htsjdk.samtools.cram.encoding.writer with parameters of type CompressionHeader

Modifier and Type	Method and Description
Writer	DataWriterFactory.buildWriter(BitOutputStream bitOutputStream, java.util.Map<java.lang.Integer,ExposedByteArrayOutputStream> outputMap, CompressionHeader h, int refId)

Uses of CompressionHeader in htsjdk.samtools.cram.structure

Fields in htsjdk.samtools.cram.structure declared as CompressionHeader

Modifier and Type	Field and Description
CompressionHeader	Container.header