Uses of Class
htsjdk.samtools.cram.structure.CramHeader

Packages that use CramHeader

Package	Description
htsjdk.samtools
htsjdk.samtools.cram.build
htsjdk.samtools.cram.structure

Uses of CramHeader in htsjdk.samtools

Methods in htsjdk.samtools that return CramHeader

Modifier and Type	Method and Description
CramHeader	CRAMIterator.getCramHeader()

Uses of CramHeader in htsjdk.samtools.cram.build

Methods in htsjdk.samtools.cram.build that return CramHeader

Modifier and Type	Method and Description
CramHeader	CramContainerIterator.getCramHeader()
CramHeader	CramSpanContainerIterator.getCramHeader()
static CramHeader	CramIO.readCramHeader(java.io.InputStream inputStream) Read CRAM header from the given InputStream.

Methods in htsjdk.samtools.cram.build with parameters of type CramHeader

Modifier and Type	Method and Description
static boolean	CramIO.replaceCramHeader(java.io.File file, CramHeader newHeader) Attempt to replace the SAM file header in the CRAM file.
static long	CramIO.writeCramHeader(CramHeader cramHeader, java.io.OutputStream outputStream) Writes CRAM header into the specified OutputStream.

Uses of CramHeader in htsjdk.samtools.cram.structure

Methods in htsjdk.samtools.cram.structure that return CramHeader

Modifier and Type	Method and Description
CramHeader	CramHeader.clone() Copy the CRAM header into a new CramHeader object.