Uses of Interface
htsjdk.samtools.util.Locatable

Packages that use Locatable

Package	Description
htsjdk.samtools
htsjdk.samtools.sra
htsjdk.samtools.util
htsjdk.tribble
htsjdk.tribble.bed
htsjdk.tribble.gelitext
htsjdk.variant.variantcontext

Uses of Locatable in htsjdk.samtools

Classes in htsjdk.samtools that implement Locatable

Modifier and Type	Class and Description
class	BAMRecord Wrapper class for binary BAM records.
class	SAMRecord Java binding for a SAM file record.

Uses of Locatable in htsjdk.samtools.sra

Classes in htsjdk.samtools.sra that implement Locatable

Modifier and Type	Class and Description
class	SRALazyRecord Extends SAMRecord so that any of the fields will be loaded only when needed.

Uses of Locatable in htsjdk.samtools.util

Classes in htsjdk.samtools.util that implement Locatable

Modifier and Type	Class and Description
class	Interval Represents a simple interval on a sequence.

Uses of Locatable in htsjdk.tribble

Subinterfaces of Locatable in htsjdk.tribble

Modifier and Type	Interface and Description
interface	Feature Represents a locus on a reference sequence.

Classes in htsjdk.tribble that implement Locatable

Modifier and Type	Class and Description
class	SimpleFeature A simple concrete Feature.

Uses of Locatable in htsjdk.tribble.bed

Subinterfaces of Locatable in htsjdk.tribble.bed

Modifier and Type	Interface and Description
interface	BEDFeature

Classes in htsjdk.tribble.bed that implement Locatable

Modifier and Type	Class and Description
class	FullBEDFeature Object for full BED file.
class	SimpleBEDFeature Feature from a BED file without exon blocks.

Uses of Locatable in htsjdk.tribble.gelitext

Classes in htsjdk.tribble.gelitext that implement Locatable

Modifier and Type	Class and Description
class	GeliTextFeature Deprecated. this is deprecated and no longer supported

Uses of Locatable in htsjdk.variant.variantcontext

Classes in htsjdk.variant.variantcontext that implement Locatable

Modifier and Type	Class and Description
class	VariantContext High-level overview