Uses of Interface
htsjdk.samtools.util.LocationAware

Packages that use LocationAware

Package	Description
htsjdk.samtools.util
htsjdk.tribble
htsjdk.tribble.readers

Uses of LocationAware in htsjdk.samtools.util

Classes in htsjdk.samtools.util that implement LocationAware

Modifier and Type	Class and Description
class	BlockCompressedInputStream
class	BlockCompressedOutputStream Writer for a file that is a series of gzip blocks (BGZF format).

Uses of LocationAware in htsjdk.tribble

Methods in htsjdk.tribble that return LocationAware

Modifier and Type	Method and Description
LocationAware	AsciiFeatureCodec.makeIndexableSourceFromStream(java.io.InputStream bufferedInputStream)
LocationAware	FeatureCodec.makeIndexableSourceFromStream(java.io.InputStream bufferedInputStream) Generates a LocationAware reader of type SOURCE.
LocationAware	BinaryFeatureCodec.makeIndexableSourceFromStream(java.io.InputStream bufferedInputStream) PositionalBufferedStream is already LocationAware.

Uses of LocationAware in htsjdk.tribble.readers

Subinterfaces of LocationAware in htsjdk.tribble.readers

Modifier and Type	Interface and Description
interface	Positional Minimal interface for an object at support getting the current position in the stream / writer / file, as well as a handful of other reader-like features.

Classes in htsjdk.tribble.readers that implement LocationAware

Modifier and Type	Class and Description
class	AsciiLineReader A simple class that provides AsciiLineReader.readLine() functionality around a PositionalBufferedStream BufferedReader and its BufferedReader.readLine() method should be used in preference to this class (when the LocationAware functionality is not required) because it offers greater performance.
class	AsciiLineReaderIterator A class that iterates over the lines and line positions in an AsciiLineReader.
class	PositionalBufferedStream A wrapper around an InputStream which performs it's own buffering, and keeps track of the position.