Uses of Class
htsjdk.samtools.util.QualityEncodingDetector.FileContext

Packages that use QualityEncodingDetector.FileContext

Package	Description
htsjdk.samtools.util

Uses of QualityEncodingDetector.FileContext in htsjdk.samtools.util

Methods in htsjdk.samtools.util that return QualityEncodingDetector.FileContext

Modifier and Type	Method and Description
static QualityEncodingDetector.FileContext	QualityEncodingDetector.FileContext.valueOf(java.lang.String name) Returns the enum constant of this type with the specified name.
static QualityEncodingDetector.FileContext[]	QualityEncodingDetector.FileContext.values() Returns an array containing the constants of this enum type, in the order they are declared.

Methods in htsjdk.samtools.util with parameters of type QualityEncodingDetector.FileContext

Modifier and Type	Method and Description
FastqQualityFormat	QualityEncodingDetector.generateBestGuess(QualityEncodingDetector.FileContext context, FastqQualityFormat expectedQuality) Make the best guess at the quality format.