Uses of Class
htsjdk.tribble.AsciiFeatureCodec

Packages that use AsciiFeatureCodec

Package	Description
htsjdk.tribble
htsjdk.tribble.bed
htsjdk.tribble.gelitext
htsjdk.variant.vcf

Uses of AsciiFeatureCodec in htsjdk.tribble

Constructors in htsjdk.tribble with parameters of type AsciiFeatureCodec

Constructor and Description
TabixFeatureReader(java.lang.String featureFile, AsciiFeatureCodec codec)
TabixFeatureReader(java.lang.String featureFile, java.lang.String indexFile, AsciiFeatureCodec codec)

Uses of AsciiFeatureCodec in htsjdk.tribble.bed

Subclasses of AsciiFeatureCodec in htsjdk.tribble.bed

Modifier and Type	Class and Description
class	BEDCodec Codec for parsing BED file, as described by UCSC See https://genome.ucsc.edu/FAQ/FAQformat.html#format1

Uses of AsciiFeatureCodec in htsjdk.tribble.gelitext

Subclasses of AsciiFeatureCodec in htsjdk.tribble.gelitext

Modifier and Type	Class and Description
class	GeliTextCodec Deprecated. This is deprecated and unsupported.

Uses of AsciiFeatureCodec in htsjdk.variant.vcf

Subclasses of AsciiFeatureCodec in htsjdk.variant.vcf

Modifier and Type	Class and Description
class	AbstractVCFCodec
class	VCF3Codec A feature codec for the VCF3 specification, to read older VCF files.
class	VCFCodec A feature codec for the VCF 4 specification