Uses of Class
htsjdk.tribble.index.TribbleIndexCreator

Packages that use TribbleIndexCreator

Package	Description
htsjdk.tribble.index
htsjdk.tribble.index.interval
htsjdk.tribble.index.linear

Uses of TribbleIndexCreator in htsjdk.tribble.index

Subclasses of TribbleIndexCreator in htsjdk.tribble.index

Modifier and Type	Class and Description
class	DynamicIndexCreator A DynamicIndexCreator creates the proper index based on an IndexFactory.IndexBalanceApproach and the characteristics of the file.

Methods in htsjdk.tribble.index that return types with arguments of type TribbleIndexCreator

Modifier and Type	Method and Description
protected static java.util.LinkedHashMap<java.lang.Double,TribbleIndexCreator>	DynamicIndexCreator.scoreIndexes(double densityOfFeatures, java.util.Map<IndexFactory.IndexType,TribbleIndexCreator> indexes, int longestFeature, IndexFactory.IndexBalanceApproach iba) score the available indexes for the specified density and feature lengths The scoring method is trying to determine how many features would be returned for a sample one base query; or: (features/seek).

Method parameters in htsjdk.tribble.index with type arguments of type TribbleIndexCreator

Modifier and Type	Method and Description
protected static java.util.LinkedHashMap<java.lang.Double,TribbleIndexCreator>	DynamicIndexCreator.scoreIndexes(double densityOfFeatures, java.util.Map<IndexFactory.IndexType,TribbleIndexCreator> indexes, int longestFeature, IndexFactory.IndexBalanceApproach iba) score the available indexes for the specified density and feature lengths The scoring method is trying to determine how many features would be returned for a sample one base query; or: (features/seek).

Uses of TribbleIndexCreator in htsjdk.tribble.index.interval

Subclasses of TribbleIndexCreator in htsjdk.tribble.index.interval

Modifier and Type	Class and Description
class	IntervalIndexCreator Creates interval indexes from a stream of features

Uses of TribbleIndexCreator in htsjdk.tribble.index.linear

Subclasses of TribbleIndexCreator in htsjdk.tribble.index.linear

Modifier and Type	Class and Description
class	LinearIndexCreator For creating a LinearIndex from a stream of features.