Uses of Package
htsjdk.tribble.index

Packages that use htsjdk.tribble.index

Package	Description
htsjdk.tribble
htsjdk.tribble.example
htsjdk.tribble.index
htsjdk.tribble.index.interval
htsjdk.tribble.index.linear
htsjdk.tribble.index.tabix
htsjdk.variant.variantcontext.writer

Classes in htsjdk.tribble.index used by htsjdk.tribble

Class and Description
Index Interface for all index implementations.

Classes in htsjdk.tribble.index used by htsjdk.tribble.example

Class and Description
Index Interface for all index implementations.

Classes in htsjdk.tribble.index used by htsjdk.tribble.index

Class and Description
AbstractIndex An abstract implementation of the index class.
AbstractIndex.BlockStats
AbstractIndex.IndexType
Block Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
ChrIndex Represents an index on a specific chromosome
Index Interface for all index implementations.
IndexCreator An interface for creating indexes
IndexFactory.IndexBalanceApproach We can optimize index-file-creation for different factors.
IndexFactory.IndexType an enum that contains all of the information about the index types, and how to create them
MutableIndex Some Index implementations can be modified in memory.
TribbleIndexCreator Base class for Tribble-specific index creators.

Classes in htsjdk.tribble.index used by htsjdk.tribble.index.interval

Class and Description
AbstractIndex An abstract implementation of the index class.
Block Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
ChrIndex Represents an index on a specific chromosome
Index Interface for all index implementations.
IndexCreator An interface for creating indexes
MutableIndex Some Index implementations can be modified in memory.
TribbleIndexCreator Base class for Tribble-specific index creators.

Classes in htsjdk.tribble.index used by htsjdk.tribble.index.linear

Class and Description
AbstractIndex An abstract implementation of the index class.
Block Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
ChrIndex Represents an index on a specific chromosome
Index Interface for all index implementations.
IndexCreator An interface for creating indexes
MutableIndex Some Index implementations can be modified in memory.
TribbleIndexCreator Base class for Tribble-specific index creators.

Classes in htsjdk.tribble.index used by htsjdk.tribble.index.tabix

Class and Description
Block Represents a contiguous block of bytes in a file, defined by a start position and size (in bytes)
Index Interface for all index implementations.
IndexCreator An interface for creating indexes

Classes in htsjdk.tribble.index used by htsjdk.variant.variantcontext.writer

Class and Description
IndexCreator An interface for creating indexes