Uses of Class
htsjdk.tribble.index.tabix.TabixFormat

Packages that use TabixFormat

Package	Description
htsjdk.tribble.index
htsjdk.tribble.index.tabix

Uses of TabixFormat in htsjdk.tribble.index

Methods in htsjdk.tribble.index with parameters of type TabixFormat

Modifier and Type	Method and Description
static <FEATURE_TYPE extends Feature,SOURCE_TYPE> TabixIndex	IndexFactory.createTabixIndex(java.io.File inputFile, FeatureCodec<FEATURE_TYPE,SOURCE_TYPE> codec, TabixFormat tabixFormat, SAMSequenceDictionary sequenceDictionary)

Uses of TabixFormat in htsjdk.tribble.index.tabix

Fields in htsjdk.tribble.index.tabix declared as TabixFormat

Modifier and Type	Field and Description
static TabixFormat	TabixFormat.BED
static TabixFormat	TabixFormat.GFF Predefined headers for known formats
static TabixFormat	TabixFormat.PSLTBL
static TabixFormat	TabixFormat.SAM
static TabixFormat	TabixFormat.VCF

Methods in htsjdk.tribble.index.tabix that return TabixFormat

Modifier and Type	Method and Description
TabixFormat	TabixFormat.clone()
TabixFormat	TabixIndex.getFormatSpec()

Constructors in htsjdk.tribble.index.tabix with parameters of type TabixFormat

Constructor and Description
TabixIndex(TabixFormat formatSpec, java.util.List<java.lang.String> sequenceNames, BinningIndexContent[] indices)
TabixIndexCreator(SAMSequenceDictionary sequenceDictionary, TabixFormat formatSpec)
TabixIndexCreator(TabixFormat formatSpec)