Uses of Interface
htsjdk.tribble.readers.LineIterator

Packages that use LineIterator

Package	Description
htsjdk.tribble
htsjdk.tribble.bed
htsjdk.tribble.example
htsjdk.tribble.gelitext
htsjdk.tribble.readers
htsjdk.variant.vcf

Uses of LineIterator in htsjdk.tribble

Methods in htsjdk.tribble that return LineIterator

Modifier and Type	Method and Description
LineIterator	AsciiFeatureCodec.makeSourceFromStream(java.io.InputStream bufferedInputStream)

Methods in htsjdk.tribble with parameters of type LineIterator

Modifier and Type	Method and Description
void	AsciiFeatureCodec.close(LineIterator lineIterator)
T	AsciiFeatureCodec.decode(LineIterator lineIterator) Convenience method.
boolean	AsciiFeatureCodec.isDone(LineIterator lineIterator)
abstract java.lang.Object	AsciiFeatureCodec.readActualHeader(LineIterator reader) Read and return the header, or null if there is no header.
FeatureCodecHeader	AsciiFeatureCodec.readHeader(LineIterator lineIterator)

Uses of LineIterator in htsjdk.tribble.bed

Methods in htsjdk.tribble.bed with parameters of type LineIterator

Modifier and Type	Method and Description
java.lang.Object	BEDCodec.readActualHeader(LineIterator reader)

Uses of LineIterator in htsjdk.tribble.example

Method parameters in htsjdk.tribble.example with type arguments of type LineIterator

Modifier and Type	Method and Description
static <FEATURE_TYPE extends Feature> void	ExampleBinaryCodec.convertToBinaryTest(java.io.File source, java.io.File dest, FeatureCodec<FEATURE_TYPE,LineIterator> codec) Convenience method that creates an ExampleBinaryCodec file from another feature file.

Uses of LineIterator in htsjdk.tribble.gelitext

Methods in htsjdk.tribble.gelitext with parameters of type LineIterator

Modifier and Type	Method and Description
java.lang.Object	GeliTextCodec.readActualHeader(LineIterator reader) Deprecated.

Uses of LineIterator in htsjdk.tribble.readers

Classes in htsjdk.tribble.readers that implement LineIterator

Modifier and Type	Class and Description
class	AsciiLineReaderIterator A class that iterates over the lines and line positions in an AsciiLineReader.
class	LineIteratorImpl A simple iterator over the elements in LineReader.

Uses of LineIterator in htsjdk.variant.vcf

Methods in htsjdk.variant.vcf with parameters of type LineIterator

Modifier and Type	Method and Description
java.lang.Object	VCF3Codec.readActualHeader(LineIterator reader)
java.lang.Object	VCFCodec.readActualHeader(LineIterator lineIterator) Reads all of the header from the provided iterator, but no reads no further.