Uses of Interface
htsjdk.variant.variantcontext.filter.VariantContextFilter

Packages that use VariantContextFilter

Package	Description
htsjdk.variant.variantcontext.filter

Uses of VariantContextFilter in htsjdk.variant.variantcontext.filter

Classes in htsjdk.variant.variantcontext.filter that implement VariantContextFilter

Modifier and Type	Class and Description
class	CompoundFilter A Predicate on VariantContexts that returns true when either all its sub-predicates are true, or none are false.
class	GenotypeQualityFilter A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
class	HeterozygosityFilter A Predicate on VariantContexts that either returns true at heterozygous sites (invertible to false).
class	PassingVariantFilter A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
class	SnpFilter A Predicate on VariantContexts that returns true at sites that are SNPs

Constructors in htsjdk.variant.variantcontext.filter with parameters of type VariantContextFilter

Constructor and Description
FilteringIterator(java.util.Iterator<VariantContext> iterator, VariantContextFilter filter) Constructor of an iterator based on the provided iterator and predicate.