Package htsjdk.variant.variantcontext.filter

Interface Summary

Interface	Description
VariantContextFilter	API for filtering VariantContexts

Class Summary

Class	Description
CompoundFilter	A Predicate on VariantContexts that returns true when either all its sub-predicates are true, or none are false.
FilteringIterator	A filtering iterator for VariantContexts that takes a base iterator and a VariantContextFilter.
GenotypeQualityFilter	A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
HeterozygosityFilter	A Predicate on VariantContexts that either returns true at heterozygous sites (invertible to false).
PassingVariantFilter	A Predicate on VariantContexts that returns true at sites that are either unfiltered, or passing (as variants).
SnpFilter	A Predicate on VariantContexts that returns true at sites that are SNPs