| Package | Description |
|---|---|
| htsjdk.variant.bcf2 | |
| htsjdk.variant.variantcontext | |
| htsjdk.variant.variantcontext.writer | |
| htsjdk.variant.vcf |
| Class and Description |
|---|
| VCFHeader
A class to represent a VCF header
|
| Class and Description |
|---|
| VCFCompoundHeaderLine
a base class for compound header lines, which include info lines and format lines (so far)
|
| VCFContigHeaderLine
A special class representing a contig VCF header line.
|
| VCFHeader
A class to represent a VCF header
|
| Class and Description |
|---|
| VCFCompoundHeaderLine
a base class for compound header lines, which include info lines and format lines (so far)
|
| VCFHeader
A class to represent a VCF header
|
| VCFHeaderLineCount
the count encodings we use for fields in VCF header lines
|
| Class and Description |
|---|
| AbstractVCFCodec |
| VCFCompoundHeaderLine
a base class for compound header lines, which include info lines and format lines (so far)
|
| VCFCompoundHeaderLine.SupportedHeaderLineType |
| VCFContigHeaderLine
A special class representing a contig VCF header line.
|
| VCFFileReader
Simplified interface for reading from VCF/BCF files.
|
| VCFFilterHeaderLine |
| VCFFormatHeaderLine |
| VCFHeader
A class to represent a VCF header
|
| VCFHeader.HEADER_FIELDS |
| VCFHeaderLine |
| VCFHeaderLineCount
the count encodings we use for fields in VCF header lines
|
| VCFHeaderLineType
the type encodings we use for fields in VCF header lines
|
| VCFHeaderVersion
information that identifies each header version
|
| VCFIDHeaderLine
an interface for ID-based header lines
|
| VCFInfoHeaderLine |
| VCFRecordCodec
Writes VariantContext instances to an OutputStream without headers or metadata.
|
| VCFSimpleHeaderLine |