pappso::TimsFrame Member List

This is the complete list of members for pappso::TimsFrame, including all inherited members.

checkScanNum(std::size_t scanNum) const	pappso::TimsFrameBase
cumulateScan(std::size_t scanNum, std::map< quint32, quint32 > &accumulate_into) const	pappso::TimsFrame	protectedvirtual
cumulateScan2(std::size_t scanNum, std::map< quint32, quint32 > &accumulate_into, double mz_range_begin, double mz_range_end, quint32 accepted_tof_index_range_begin, quint32 accepted_tof_index_range_end) const	pappso::TimsFrame	protectedvirtual
cumulateScansInRawMap(std::map< quint32, quint32 > &rawSpectrum, std::size_t scanNumBegin, std::size_t scanNumEnd) const override	pappso::TimsFrame	virtual
cumulateScansIntensities(std::size_t scanNumBegin, std::size_t scanNumEnd) const override	pappso::TimsFrame	virtual
cumulateScansToTrace(std::size_t scanNumBegin, std::size_t scanNumEnd) const override	pappso::TimsFrame	virtual
cumulateScansToTraceMzDownResolution(std::size_t mzindex_merge_window, std::size_t scanNumBegin, std::size_t scanNumEnd, quint32 &minimum_index, quint32 &maximum_index) const override	pappso::TimsFrame	virtual
cumulateScansToTraceMzDownResolution2(std::size_t mz_index_merge_window, double mz_range_begin, double mz_range_end, std::size_t mobility_scan_begin, std::size_t mobility_scan_end, quint32 &mz_minimum_index_out, quint32 &mz_maximum_index_out) const	pappso::TimsFrame
cumulateSingleScanIntensities(std::size_t scanNum) const override	pappso::TimsFrame	virtual
downsizeMzRawMap(std::size_t mzindex_merge_window, std::map< quint32, quint32 > &rawSpectrum) const	pappso::TimsFrameBase
extractTimsXicListInRtRange(std::vector< XicCoordTims * >::iterator &itXicListbegin, std::vector< XicCoordTims * >::iterator &itXicListend, XicExtractMethod method) const	pappso::TimsFrame	protected
getDriftTime(std::size_t scanNum) const	pappso::TimsFrameBase
getId() const	pappso::TimsFrameBase
getIonMobilityTraceByMzIndexRange(std::size_t mz_index_lower_bound, std::size_t mz_index_upper_bound, XicExtractMethod method) const	pappso::TimsFrameBase	virtual
getMassSpectrumCstSPtr(std::size_t scanNum) const	pappso::TimsFrame	virtual
getMassSpectrumSPtr(std::size_t scanNum) const override	pappso::TimsFrame	virtual
getMaximumRawMassIndex() const	pappso::TimsFrameBase	virtual
getMsLevel() const	pappso::TimsFrameBase
getMzCalibrationInterfaceSPtr() const final	pappso::TimsFrameBase	virtual
getNbrPeaks(std::size_t scanNum) const override	pappso::TimsFrame	virtual
getOneOverK0Transformation(std::size_t scanNum) const	pappso::TimsFrameBase
getRawTraceSPtr(std::size_t scanNum) const	pappso::TimsFrame	protectedvirtual
getScanIndexList(std::size_t scanNum) const override	pappso::TimsFrame	virtual
getScanIntensities(std::size_t scanNum) const override	pappso::TimsFrame	virtual
getScanNumFromOneOverK0(double one_over_k0) const	pappso::TimsFrameBase
getScanOffset(std::size_t scanNum) const	pappso::TimsFrame	private
getTime() const	pappso::TimsFrameBase
getTotalNumberOfScans() const	pappso::TimsFrameBase	virtual
getTraceFromCumulatedScans(std::map< quint32, quint32 > &accumulated_scans) const	pappso::TimsFrameBase
getTraceFromCumulatedScansBuiltinCentroid(std::map< quint32, quint32 > &accumulated_scans) const	pappso::TimsFrameBase
getVoltageTransformation(std::size_t scanNum) const	pappso::TimsFrameBase
hasSameCalibrationData(const TimsFrameBase &other) const	pappso::TimsFrameBase	virtual
m_accumulationTime	pappso::TimsFrameBase	protected
m_msMsType	pappso::TimsFrameBase	protected
m_scanNumber	pappso::TimsFrameBase	protected
m_time	pappso::TimsFrameBase	protected
m_timsC6	pappso::TimsFrameBase	protected
m_timsC7	pappso::TimsFrameBase	protected
m_timsDataFrame	pappso::TimsFrame	protected
m_timsDvStart	pappso::TimsFrameBase	protected
m_timsId	pappso::TimsFrameBase	protected
m_timsNdelay	pappso::TimsFrameBase	protected
m_timsSlope	pappso::TimsFrameBase	protected
m_timsTtrans	pappso::TimsFrameBase	protected
m_timsVmax	pappso::TimsFrameBase	protected
m_timsVmin	pappso::TimsFrameBase	protected
msp_mzCalibration	pappso::TimsFrameBase	protected
setAccumulationTime(double accumulation_time_ms)	pappso::TimsFrameBase
setMsMsType(quint8 type)	pappso::TimsFrameBase
setMzCalibration(double T1_frame, double T2_frame, double digitizerTimebase, double digitizerDelay, double C0, double C1, double C2, double C3, double C4, double T1_ref, double T2_ref, double dC1, double dC2)	pappso::TimsFrameBase
setMzCalibrationInterfaceSPtr(MzCalibrationInterfaceSPtr mzCalibration)	pappso::TimsFrameBase
setTime(double time)	pappso::TimsFrameBase
setTimsCalibration(int tims_model_type, double C0, double C1, double C2, double C3, double C4, double C5, double C6, double C7, double C8, double C9)	pappso::TimsFrameBase
TimsDirectXicExtractor	pappso::TimsFrame	private
TimsFrame(std::size_t timsId, quint32 scanNum, char *p_bytes, std::size_t len)	pappso::TimsFrame
TimsFrame(const TimsFrame &other)	pappso::TimsFrame
TimsFrame(std::size_t timsId, quint32 scanNum)	pappso::TimsFrame	protected
TimsFrameBase(std::size_t timsId, quint32 scanNum)	pappso::TimsFrameBase
TimsFrameBase(const TimsFrameBase &other)	pappso::TimsFrameBase
unshufflePacket(const char *src)	pappso::TimsFrame	private
~TimsFrame()	pappso::TimsFrame	virtual
~TimsFrameBase()	pappso::TimsFrameBase	virtual