peptidemodel.h File Reference

SpecGlobTool peptide model. More...

#include "../../peptide/peptide.h"
#include "../../massspectrum/qualifiedmassspectrum.h"
#include "types.h"
#include "../../exportinmportconfig.h"

Go to the source code of this file.

Classes
struct	pappso::specglob::AminoAcidModel
struct	pappso::specglob::TheoreticalPeakDataPoint
class	pappso::specglob::PeptideModel

Namespaces
namespace	pappso
	tries to keep as much as possible monoisotopes, removing any possible C13 peaks and changes multicharge peaks to monocharge
namespace	pappso::specglob

Detailed Description

SpecGlobTool peptide model.

Date

14/11/2023

Author

Olivier Langella

C++ implementation of the SpecGlob algorithm described in :

1. Prunier, G. et al. Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides. BMC Bioinformatics 24, 421 (2023).

   HAL Id : hal-04296170 , version 1 Mot de passe : hxo20cl DOI : 10.1186/s12859-023-05555-y

Date

14/11/2023

Author

Olivier Langella

Todo:

https://www.psidev.info/proforma

C++ implementation of the SpecGlob algorithm described in :

1. Prunier, G. et al. Fast alignment of mass spectra in large proteomics datasets, capturing dissimilarities arising from multiple complex modifications of peptides. BMC Bioinformatics 24, 421 (2023).

   HAL Id : hal-04296170 , version 1 Mot de passe : hxo20cl DOI : 10.1186/s12859-023-05555-y

Definition in file peptidemodel.h.