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RDKit
Open-source cheminformatics and machine learning.
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Classes | |
| struct | CrystalFFDetails |
| struct | ExpTorsionAngle |
| A structure used to the experimental torsion patterns. More... | |
| class | TorsionAngleContribM6 |
| the torsion term for multiplicity m = 1 - 6 More... | |
Functions | |
| RDKIT_FORCEFIELDHELPERS_EXPORT double | calcTorsionEnergyM6 (const std::vector< double > &V, const std::vector< int > &signs, const double cosPhi) |
| calculates and returns the torsional energy | |
| RDKIT_FORCEFIELDHELPERS_EXPORT void | getExperimentalTorsions (const RDKit::ROMol &mol, CrystalFFDetails &details, bool useExpTorsions=false, bool useSmallRingTorsions=false, bool useMacrocycleTorsions=false, bool useBasicKnowledge=false, unsigned int version=1, bool verbose=false) |
| Get the experimental torsional angles in a molecule. | |
| RDKIT_FORCEFIELDHELPERS_EXPORT void | getExperimentalTorsions (const RDKit::ROMol &mol, CrystalFFDetails &details, std::vector< std::tuple< unsigned int, std::vector< unsigned int >, const ExpTorsionAngle * > > &torsionBonds, bool useExpTorsions=false, bool useSmallRingTorsions=false, bool useMacrocycleTorsions=false, bool useBasicKnowledge=false, unsigned int version=1, bool verbose=false) |
| This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. | |
| RDKIT_FORCEFIELDHELPERS_EXPORT double ForceFields::CrystalFF::calcTorsionEnergyM6 | ( | const std::vector< double > & | V, |
| const std::vector< int > & | signs, | ||
| const double | cosPhi | ||
| ) |
calculates and returns the torsional energy
| RDKIT_FORCEFIELDHELPERS_EXPORT void ForceFields::CrystalFF::getExperimentalTorsions | ( | const RDKit::ROMol & | mol, |
| CrystalFFDetails & | details, | ||
| bool | useExpTorsions = false, |
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| bool | useSmallRingTorsions = false, |
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| bool | useMacrocycleTorsions = false, |
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| bool | useBasicKnowledge = false, |
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| unsigned int | version = 1, |
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| bool | verbose = false |
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| ) |
Get the experimental torsional angles in a molecule.
| RDKIT_FORCEFIELDHELPERS_EXPORT void ForceFields::CrystalFF::getExperimentalTorsions | ( | const RDKit::ROMol & | mol, |
| CrystalFFDetails & | details, | ||
| std::vector< std::tuple< unsigned int, std::vector< unsigned int >, const ExpTorsionAngle * > > & | torsionBonds, | ||
| bool | useExpTorsions = false, |
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| bool | useSmallRingTorsions = false, |
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| bool | useMacrocycleTorsions = false, |
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| bool | useBasicKnowledge = false, |
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| unsigned int | version = 1, |
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| bool | verbose = false |
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| ) |
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts.