alignment_emitter.cpp File Reference

#include "alignment_emitter.hpp"
#include "alignment.hpp"
#include "json2pb.h"
#include <vg/io/hfile_cppstream.hpp>
#include <vg/io/stream.hpp>
#include <sstream>

Namespaces
	vg

Functions
unique_ptr< AlignmentEmitter >	vg::get_alignment_emitter (const string &filename, const string &format, const map< string, int64_t > &path_length, size_t max_threads, const PathPositionHandleGraph *splicing_graph)

Detailed Description

Implements a system for emitting alignments and groups of alignments in multiple formats.