gfa.hpp File Reference

#include "vg.hpp"

Namespaces
	vg

Functions
bool	vg::gfa_to_graph (istream &in, VG *graph, bool only_perfect_match)
void	vg::graph_to_gfa (const VG *graph, ostream &out)
	Export the given VG graph to the given GFA file. More...

Detailed Description

Defines GFA I/O algorithms for VG graphs.

Includes an algorithm for converting from GFA, including non-perfect-match edge overlaps and edges that specify containment of one node in another, to a blunt-ended VG.