autoindex_main.cpp File Reference

#include <getopt.h>
#include <iostream>
#include <htslib/hts.h>
#include <htslib/vcf.h>
#include "subcommand.hpp"
#include "index_registry.hpp"
#include "utility.hpp"

Functions
bool	vcf_is_phased (const string &filepath)
void	help_autoindex (char **argv)
int	main_autoindex (int argc, char **argv)

Detailed Description

Defines the "vg autoindex" subcommand, which produces indexes needed for other subcommands

Function Documentation

help_autoindex()

void help_autoindex

(

char **

argv

)

main_autoindex()

int main_autoindex	(	int	argc,
		char **	argv
	)

vcf_is_phased()

bool vcf_is_phased

(

const string &

filepath

)