This is the complete list of members for vg::FlowCaller, including all inherited members.

add_variant(vcflib::Variant &var) const	vg::VCFOutputCaller
alignment_emitter	vg::FlowCaller	protected
break_chain(const HandleGraph &graph, const Chain &chain, size_t max_edges, size_t max_trivial)	vg::GraphCaller	protected
call_snarl(const Snarl &snarl, int ploidy)	vg::FlowCaller	virtual
call_top_level_chains(const HandleGraph &graph, int ploidy, size_t max_edges, size_t max_trivial, bool recurse_on_fail=true)	vg::GraphCaller	virtual
call_top_level_snarls(const HandleGraph &graph, int ploidy, bool recurse_on_fail=true)	vg::GraphCaller	virtual
emit_gaf_traversals(const PathHandleGraph &graph, const vector< SnarlTraversal > &travs)	vg::GAFOutputCaller
emit_gaf_variant(const HandleGraph &graph, const Snarl &snarl, const vector< SnarlTraversal > &traversals, const vector< int > &genotype)	vg::GAFOutputCaller
emit_variant(const PathPositionHandleGraph &graph, SnarlCaller &snarl_caller, const Snarl &snarl, const vector< SnarlTraversal > &called_traversals, const vector< int > &genotype, int ref_trav_idx, const unique_ptr< SnarlCaller::CallInfo > &call_info, const string &ref_path_name, int ref_offset, bool genotype_snarls) const	vg::VCFOutputCaller	protected
emitter	vg::GAFOutputCaller	protected
flatten_common_allele_ends(vcflib::Variant &variant, bool backward, size_t len_override) const	vg::VCFOutputCaller	protected
FlowCaller(const PathPositionHandleGraph &graph, SupportBasedSnarlCaller &snarl_caller, SnarlManager &snarl_manager, const string &sample_name, TraversalFinder &traversal_finder, const vector< string > &ref_paths, const vector< size_t > &ref_path_offsets, AlignmentEmitter *aln_emitter, bool traversals_only, bool gaf_output, size_t trav_padding, bool genotype_snarls)	vg::FlowCaller
gaf_output	vg::FlowCaller	protected
gaf_sample_name	vg::GAFOutputCaller	protected
GAFOutputCaller(AlignmentEmitter *emitter, const string &sample_name, const vector< string > &ref_paths, size_t trav_padding)	vg::GAFOutputCaller
genotype_snarls	vg::FlowCaller	protected
get_ref_interval(const PathPositionHandleGraph &graph, const Snarl &snarl, const string &ref_path_name) const	vg::VCFOutputCaller	protected
graph	vg::FlowCaller	protected
GraphCaller(SnarlCaller &snarl_caller, SnarlManager &snarl_manager)	vg::GraphCaller
max_snarl_edges	vg::FlowCaller	protected
max_uncalled_alleles	vg::VCFOutputCaller	protected
output_variants	vg::VCFOutputCaller	mutableprotected
output_vcf	vg::VCFOutputCaller	mutableprotected
pad_traversal(const PathHandleGraph &graph, const SnarlTraversal &trav) const	vg::GAFOutputCaller
ref_offsets	vg::FlowCaller	protected
ref_path_set	vg::FlowCaller	protected
ref_paths	vg::FlowCaller	protected
sample_name	vg::VCFOutputCaller	protected
snarl_caller	vg::GraphCaller	protected
snarl_manager	vg::GraphCaller	protected
trav_padding	vg::GAFOutputCaller	protected
traversal_finder	vg::FlowCaller	protected
traversals_only	vg::FlowCaller	protected
vcf_header(const PathHandleGraph &graph, const vector< string > &contigs, const vector< size_t > &contig_length_overrides={}) const	vg::FlowCaller	virtual
VCFOutputCaller(const string &sample_name)	vg::VCFOutputCaller
write_variants(ostream &out_stream) const	vg::VCFOutputCaller
~FlowCaller()	vg::FlowCaller	virtual
~GAFOutputCaller()	vg::GAFOutputCaller	virtual
~GraphCaller()	vg::GraphCaller	virtual
~VCFOutputCaller()	vg::VCFOutputCaller	virtual