vg::SpliceMotifs Class Reference

#include <splicing.hpp>

Public Member Functions
	SpliceMotifs (const GSSWAligner &scorer)
	SpliceMotifs (const vector< tuple< string, string, double >> &motifs, const GSSWAligner &scorer)
size_t	size () const
const string &	oriented_motif (size_t motif_num, bool left_side) const
bool	motif_is_reverse (size_t motif_num) const
string	unoriented_motif (size_t motif_num, bool left_side) const
int32_t	score (size_t motif_num) const
void	update_scoring (const GSSWAligner &scorer)

Private Member Functions
void	init (const vector< tuple< string, string, double >> &motifs, const GSSWAligner &scorer)

Private Attributes
vector< tuple< string, string, int32_t > >	data
vector< tuple< string, string, double > >	unaltered_data

Constructor & Destructor Documentation

SpliceMotifs() [1/2]

vg::SpliceMotifs::SpliceMotifs

(

const GSSWAligner &

scorer

)

SpliceMotifs() [2/2]

vg::SpliceMotifs::SpliceMotifs	(	const vector< tuple< string, string, double >> &	motifs,
		const GSSWAligner &	scorer
	)

Member Function Documentation

init()

void vg::SpliceMotifs::init ( const vector< tuple< string, string, double >> &  motifs, const GSSWAligner &  scorer  )

private

motif_is_reverse()

bool vg::SpliceMotifs::motif_is_reverse

(

size_t

motif_num

)

const

oriented_motif()

const string & vg::SpliceMotifs::oriented_motif	(	size_t	motif_num,
		bool	left_side
	)		const

score()

int32_t vg::SpliceMotifs::score

(

size_t

motif_num

)

const

size()

size_t vg::SpliceMotifs::size

(

)

const

unoriented_motif()

string vg::SpliceMotifs::unoriented_motif	(	size_t	motif_num,
		bool	left_side
	)		const

update_scoring()

void vg::SpliceMotifs::update_scoring

(

const GSSWAligner &

scorer

)

Member Data Documentation

data

vector<tuple<string, string, int32_t> > vg::SpliceMotifs::data

private

unaltered_data

vector<tuple<string, string, double> > vg::SpliceMotifs::unaltered_data

private

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The documentation for this class was generated from the following files:

• src/splicing.hpp
• src/splicing.cpp