gfa_to_handle.hpp File Reference

#include <iostream>
#include <gfakluge.hpp>
#include <cctype>
#include "../handle.hpp"

Classes
struct	vg::algorithms::GFAFormatError
	This exception will be thrown if the GFA data is not acceptable. More...

Namespaces
	vg
	vg::algorithms

Functions
void	vg::algorithms::gfa_to_handle_graph (const string &filename, MutableHandleGraph *graph, bool try_from_disk, bool try_id_increment_hint)
void	vg::algorithms::gfa_to_path_handle_graph (const string &filename, MutablePathMutableHandleGraph *graph, bool try_from_disk=true, bool try_id_increment_hint=false)
	Same as gfa_to_handle_graph but also adds path elements from the GFA to the graph. More...
void	vg::algorithms::gfa_to_path_handle_graph_in_memory (istream &in, MutablePathMutableHandleGraph *graph)

Detailed Description

Defines algorithms for copying data from GFA files into handle graphs