multipath_mapper.hpp File Reference

#include <algorithm>
#include <vg/vg.pb.h>
#include <structures/union_find.hpp>
#include <gbwt/gbwt.h>
#include <vg/io/edit.hpp>
#include <bdsg/hash_graph.hpp>
#include "hash_map.hpp"
#include "mapper.hpp"
#include "aligner.hpp"
#include "types.hpp"
#include "multipath_alignment.hpp"
#include "position.hpp"
#include "nodeside.hpp"
#include "path.hpp"
#include "snarls.hpp"
#include "haplotypes.hpp"
#include "min_distance.hpp"
#include "utility.hpp"
#include "annotation.hpp"
#include "path_component_index.hpp"
#include "memoizing_graph.hpp"
#include "statistics.hpp"
#include "splicing.hpp"
#include "identity_overlay.hpp"
#include "reverse_graph.hpp"
#include "split_strand_graph.hpp"
#include "dagified_graph.hpp"
#include "algorithms/extract_containing_graph.hpp"
#include "algorithms/extract_connecting_graph.hpp"
#include "algorithms/extract_extending_graph.hpp"
#include "algorithms/jump_along_path.hpp"
#include "algorithms/ref_path_distance.hpp"

Classes
class	vg::MultipathMapper

Namespaces
	vg

Detailed Description

Defines the MultipathMapper class